Lab Alumni

Postdocs

Maximillian Haeussler (2011-14)
Assistant Research Scientist, UC Santa Cruz

Frank Jacobs (2009-14)
Assistant Professor, University of Amsterdam

Adam Ewing (2011-14)
Research Fellow, Mater Medical Research Institute and Honorary Fellow, University of Queensland, Australia

Glenn Hickey (2011-13)
Postdoctoral Scholar, Computer Science, McGill University, Montreal, Canada

Daniel Zerbino (2010-13)
Ensembl Regulation Project Leader, Vertebrate Genomics, European Bioinformatics Institute, United Kingdom

Benedict Paten (2007-12)
Assistant Research Scientist, Comparative Genomics, UC Santa Cruz

Charles Vaske (2010-11)
Chief Scientific Officer, Five3 Genomics

Jing Zhu (2006-11)
Assistant Research Scientist, Cancer Genomics, UC Santa Cruz

Jason Underwood (2006-10)
Principal Scientist, Research and Development, Northwest Genomics Center, University of Washington

Ting Wang (2006-09)
Associate Professor, Genetics, Washington University, St. Louis, MO

Jian Ma (2007-09)
Associate Professor, Computational Biology, School of Computer Science, Carnegie Mellon, Pittsburgh, PA

Andrew Kern (2005-08)
Assistant Professor, Biological Sciences, Dartmouth College, Hanover, NH

Jakob Skou Pedersen (2004-07)
Associate Professor, Clinical Medicine, University of Aarhus, Denmark

Mario Stanke (2006-07)
Professor, Institute for Mathematics and Computer Science, University of Greifswald, Germany

Gill Bejerano (2003-07)
Associate Professor, Developmental Biology & Computer Science, Stanford University

Chen-Hsiang Yeang (2005-06)
Assistant Research Fellow, Institute of Statistical Science, Academica Sinica, Taipei, Taiwan

Katherine Pollard (2003-05)
Associate Investigator, Division of Biostatistics, Gladstone Institutes and Associate Professor, Epidemiology and Biostatistics, UCSF

Terry Furey (2002-04)
Assistant Professor, Genetics, University of North Carolina, Chapel Hill

Brian Lucena (2003-04)
Assistant Professor, Mathematics, American University in Cairo, Egypt

Mathieu Blanchette (2002-03)
Assistant Professor, Computer Science, McGill University, Montreal, Canada

Jing Wu (2002-03)

Rune Lyngsoe (2000-01)
Postdoctoral Researcher, Statistics, Oxford University, UK

Bill Noble (1998-99)
Professor, Genome Sciences and Computer Science, University of Washington

Betty Lazareva (1996-98)
Bioinformatics start-up

Tommi Jaakkola (1997-98)
Professor, Electrical Engineering and Computer Science, MIT

Anders Krogh
Professor, Functional Genomics, Bioinformatics Centre, University of Copenhagen, Denmark

PH.D. Recipients

Adam Novak (2017)

Tracy Ballinger (2015)
Bioinformatician Research Fellow, Colin Semple’s lab, Institute of Genetics and Molecular Medicine, Edinburgh, Scotland

Amie Radenbaugh (2015)
Bioinformatics scientist, NantOmics, Santa Cruz, CA

Mia Gifford (2014)
Sabbatical

Dent Earl (2014)
Software engineer, Google, Mountain View, CA

David Greenberg (2014)
Senior Scientist, Pacific Biosciences, Menlo Park, CA

Ngan Nguyen (2014)
Bioinformatics Scientist, Atreca, San Carlos, CA

Chris Szeto (2013)
Consultant, Five3 Genomics, Santa Cruz

Ted Goldstein (2013)
Research Associate, Center for Biomolecular Science & Engineering, UC Santa Cruz

Zach Sanborn (2013)
Chief Technology Officer, Five3 Genomics, Santa Cruz, CA

Stephen Benz (2012)
CEO, Five3 Genomics, Santa Cruz, CA

Courtney Onodera (2011)
Bioinformatics Scientific Programmer/Analyst, Genomic Medicine Initiative, UC San Francisco

Krishna Roskin (2010)
Postdoctoral Fellow, Department of Pathology, Stanford University School of Medicine

Robert Baertsch (2010)
MedBook Software Developer, Center for Biomolecular Science & Engineering, UC Santa Cruz

Craig Lowe (2010)
Postdoctoral Scholar, David Kingsley lab, Howard Hughes Medical Institute, Stanford University

Sol Katzman (2010)
High-Throughput Sequencing Analyst, Genome Sequencing Center, UC Santa Cruz

Brian Raney (2009)
Senior Software Developer, UCSC Genome Browser, Center for Biomolecular Science & Engineering, UC Santa Cruz

Yontao Lu (2007)
Bioinformatics Scientist, Affymetrix

Daryl Thomas (2006; M.S. in 2003)
Senior Product Manager, Genome Informatics, Life Technologies

Adam Siepel (2005)
Assistant Professor, Biological Statistics & Computational Biology, Cornell University, Ithaca, NY

Chuck Sugnet (2005)
Scientist, Engineer, Quantcast

Rachel Karchin (2003, with Prof. Karplus; 2000, M.S. with Haussler) Assistant Professor, Biomedical Engineering, Institute of Computational Medicine, Johns Hopkins University, Baltimore, MD

Hui Wang (2003)
Research Scientist, Affymetrix, Inc.

David Kulp (2003)
Assistant Professor, Computer Science, University of Massachusetts, Amherst

Stephen Winters-Hilt (2003)
Visiting Associate Professor, Computer Science and Biology, Connecticut College

Terry Furey (2002)
Assistant Professor, Genetics, Biology, University of North Carolina

Melissa Cline (2000)
Project Scientist, Molecular, Cell, & Developmental Biology, UC Santa Cruz
Associate Project Scientist, Center for Biomolecular Science & Engineering, UC Santa Cruz

Michael Brown (1999)
Research Scientist, HNC Software LLC, San Diego, CA

Kimmen Sjölander (1997)
Associate Professor, Bioengineering, UC Berkeley
(Won a U.S. Presidential Early Career Award in Science and Engineering)

Yoav Freund (1993)
Professor, Computer Science and Engineering, UC San Diego

Phil Long (1992)
Research Scientist, Google

Giulia Pagallo (1990)

Aleksandar Milosavljevic (1990)
Associate Professor, Molecular and Human Genetics, Baylor College of Medicine, Houston, TX

Nick Littlestone (1989)

Janet Blumer (1985)

M.S. Recipients
Morgan Maddren (2014)

Jeffrey Long (2012)

Tim Dreszer (2006)

Matt Xia (2002)

Wei Wu (2002)

Rachel Bevan (2002)

Trevor Bruen (2002)

Fan Shen (2001)

Albion Baucom (2000)

Rachel Karchin (2000)

David Lin (1999)

Brad Gulko (1995)

R. Underwood (1994)

Anne Urban (1994)

Jeanne Rich (1989)

Jean Cailton (1988)

Senior Thesis & Undergraduate Awards
Krishna Roskin (2002), Huffman Prize

David Konerding (1995)
Senior Engineer, Google

Jesse Reklaw (1995), Chancellor’s Award for Undergraduate Research